Inputs and parameters
Parameters
- Run functional and taxonomic annotations Yes
- Run MEGAN No
- Run annotations with COGs No
- Build submission files No
- Run blast against your own fasta file No
Annotation
Result table
| Metagene Fasta files | Metagene annotation | Diamond fosmid against NR | Diamond fosmid against Uniprot | Diamond ORFs against NR | Diamond ORFs against Uniprot |
|---|---|---|---|---|---|
| DNA - PROT | BED | TSV | TSV | TSV | TSV |
Result table by fosmid
| Sample | Length | GC% | A | T | G | C | Others | Annotated ORFs against Uniprot |
Annotated ORFs against NR |
Metagene | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| bioindent1.C1a | 38297 | 44.24 | 8711 | 12643 | 7822 | 9121 | 0 | 5 / 42 | 18 / 42 | Fasta | ||
| bioindent2.C1 | 37094 | 37.26 | 11696 | 11578 | 7119 | 6701 | 0 | 14 / 41 | 33 / 41 | Fasta | ||
Produced by MEGAN5
bioindent1.C1a
Based on Diamond results of each ORF against NR, details for each annotated ORFs (18/42)
| ORF | HSP | Max coverage | Best HSP (max. of %iden * coverage) | ||
|---|---|---|---|---|---|
| %iden. | Coverage | Species | |||
| ORF1 | 838 |
99.1%
|
41.9 |
97.3%
|
Pelotomaculum sp. PtaU1.Bin035 |
| ORF3 | 7 |
97.9%
|
35.1 |
94.6%
|
Treponema azotonutricium |
| ORF4 | 199 |
97.3%
|
28.5 |
91.4%
|
Thermodesulfitimonas autotrophica |
| ORF8 | 1000 |
99.6%
|
45.3 |
99.2%
|
Spirochaeta lutea |
| ORF14 | 1000 |
71.2%
|
47.7 |
60.5%
|
Treponema maltophilum |
| ORF18 | 1000 |
99.2%
|
49.2 |
96.1%
|
Bacteroidales bacterium Barb7 |
| ORF21 | 121 |
99.1%
|
65.7 |
99.1%
|
Candidatus Termititenax aidoneus |
| ORF25 | 17 |
98.1%
|
39.9 |
98.1%
|
Treponema azotonutricium |
| ORF27 | 1 |
51.6%
|
36.0 |
51.6%
|
Proteobacteria bacterium CAG:495 |
| ORF29 | 188 |
77.5%
|
45.8 |
77.2%
|
Treponema primitia |
| ORF30 | 803 |
99.6%
|
58.5 |
99.6%
|
Treponema primitia |
| ORF31 | 432 |
98.6%
|
62.1 |
98.6%
|
Treponema primitia |
| ORF33 | 43 |
97.5%
|
54.9 |
97.5%
|
Treponema primitia |
| ORF36 | 1000 |
99.3%
|
42.1 |
98.2%
|
Clostridium sp. AF18-27 |
| ORF37 | 2 |
76.7%
|
25.6 |
76.7%
|
Ruminococcaceae bacterium YRB3002 |
| ORF38 | 1 |
89.5%
|
37.4 |
89.5%
|
Gottschalkiaceae bacterium |
| ORF40 | 1000 |
98.0%
|
31.8 |
98.0%
|
uncultured bacterium |
| ORF41 | 3 |
88.4%
|
37.6 |
88.4%
|
Treponema primitia |
bioindent2.C1
Based on Diamond results of each ORF against NR, details for each annotated ORFs (33/41)
| ORF | HSP | Max coverage | Best HSP (max. of %iden * coverage) | ||
|---|---|---|---|---|---|
| %iden. | Coverage | Species | |||
| ORF1 | 1000 |
99.3%
|
78.1 |
82.8%
|
uncultured bacterium |
| ORF2 | 1000 |
99.5%
|
54.7 |
98.1%
|
Bifidobacterium stellenboschense |
| ORF3 | 1000 |
99.5%
|
63.6 |
95.8%
|
Kineothrix alysoides |
| ORF4 | 1000 |
99.6%
|
66.3 |
97.8%
|
Kineothrix alysoides |
| ORF5 | 980 |
99.5%
|
34.2 |
98.0%
|
Clostridiales bacterium Marseille-P2846 |
| ORF6 | 900 |
99.4%
|
73.9 |
97.0%
|
Treponema primitia |
| ORF7 | 1000 |
99.6%
|
49.4 |
96.3%
|
Treponema caldarium |
| ORF8 | 3 |
99.2%
|
27.1 |
99.2%
|
Treponema azotonutricium |
| ORF9 | 1000 |
99.6%
|
71.9 |
96.1%
|
Deltaproteobacteria bacterium |
| ORF10 | 1000 |
99.1%
|
66.1 |
99.1%
|
Treponema primitia |
| ORF11 | 58 |
95.8%
|
63.4 |
86.3%
|
Treponema primitia |
| ORF13 | 1000 |
94.9%
|
54.9 |
78.8%
|
Methanobrevibacter gottschalkii |
| ORF15 | 103 |
81.7%
|
46.7 |
78.7%
|
Methyloversatilis discipulorum |
| ORF16 | 9 |
59.4%
|
36.4 |
53.8%
|
Geobacillus sp. 12AMOR1 |
| ORF18 | 8 |
96.2%
|
33.8 |
93.9%
|
Candidatus Micrarchaeota archaeon |
| ORF19 | 1 |
51.0%
|
34.2 |
51.0%
|
Flavobacteriales bacterium CG_4_10_14_0_8_um_filter_32_5 |
| ORF20 | 95 |
99.4%
|
50.5 |
98.7%
|
Riemerella anatipestifer |
| ORF21 | 13 |
99.5%
|
45.2 |
99.5%
|
Treponema primitia |
| ORF23 | 4 |
99.4%
|
36.2 |
99.4%
|
Treponema putidum |
| ORF25 | 1000 |
87.7%
|
52.4 |
76.1%
|
Algoriphagus yeomjeoni |
| ORF27 | 5 |
79.5%
|
40.6 |
79.5%
|
Flavobacterium aciduliphilum |
| ORF29 | 22 |
94.6%
|
66.3 |
93.5%
|
Treponema pedis |
| ORF30 | 1000 |
99.6%
|
83.0 |
99.3%
|
Treponema primitia |
| ORF31 | 1000 |
95.4%
|
73.4 |
94.4%
|
Treponema primitia |
| ORF32 | 1000 |
99.5%
|
75.8 |
98.1%
|
Treponema primitia |
| ORF33 | 1000 |
99.6%
|
82.0 |
99.6%
|
Treponema primitia |
| ORF35 | 202 |
99.7%
|
53.9 |
99.7%
|
Desulfosporosinus sp. BG |
| ORF36 | 1000 |
99.9%
|
54.1 |
99.8%
|
Desulfosporosinus sp. BG |
| ORF37 | 51 |
99.5%
|
67.8 |
94.5%
|
Paenibacillus pasadenensis |
| ORF38 | 86 |
99.8%
|
56.3 |
99.8%
|
Desulfosporosinus sp. BG |
| ORF39 | 1000 |
99.6%
|
70.2 |
99.2%
|
uncultured Flavonifractor sp. |
| ORF40 | 1000 |
99.3%
|
54.6 |
96.6%
|
Ruminococcus sp. CAG:724 |
bioindent1.C1a
Based on Diamond results of each ORF against NR, details for each annotated ORFs (5/42)
| ORF | HSP | Max coverage | Best HSP (max. of %iden * coverage) | ||
|---|---|---|---|---|---|
| %iden. | Coverage | Species | |||
| ORF4 | 4 |
62.3%
|
27.5 |
62.3%
|
Escherichia coli |
| ORF8 | 3 |
99.2%
|
42.0 |
99.2%
|
Treponema pallidum |
| ORF14 | 528 |
67.5%
|
39.2 |
59.8%
|
Rhodopseudomonas palustris |
| ORF36 | 1 |
81.1%
|
27.1 |
81.1%
|
Staphylococcus xylosus |
| ORF40 | 6 |
61.8%
|
37.8 |
57.9%
|
Clostridium cellulovorans |
bioindent2.C1
Based on Diamond results of each ORF against NR, details for each annotated ORFs (14/41)
| ORF | HSP | Max coverage | Best HSP (max. of %iden * coverage) | ||
|---|---|---|---|---|---|
| %iden. | Coverage | Species | |||
| ORF1 | 12 |
99.3%
|
40.1 |
99.3%
|
Clostridium thermocellum |
| ORF2 | 1 |
84.7%
|
27.2 |
84.7%
|
Escherichia coli |
| ORF3 | 184 |
99.5%
|
62.6 |
94.4%
|
Clostridium botulinum |
| ORF4 | 228 |
99.6%
|
60.2 |
96.7%
|
Clostridium cellulolyticum |
| ORF7 | 65 |
99.6%
|
36.4 |
98.8%
|
Bradyrhizobium sp |
| ORF9 | 1 |
96.9%
|
38.2 |
96.9%
|
Escherichia coli |
| ORF10 | 3 |
96.6%
|
32.1 |
96.6%
|
Mycobacterium bovis |
| ORF13 | 19 |
81.2%
|
39.9 |
81.2%
|
Bacillus subtilis |
| ORF30 | 31 |
98.6%
|
37.2 |
98.2%
|
Thermodesulfovibrio yellowstonii |
| ORF31 | 360 |
94.4%
|
52.0 |
92.6%
|
Lactobacillus casei |
| ORF32 | 217 |
99.5%
|
44.7 |
98.6%
|
Moorella thermoacetica |
| ORF33 | 683 |
99.6%
|
56.3 |
98.5%
|
Marinobacter hydrocarbonoclasticus |
| ORF39 | 1000 |
99.6%
|
51.8 |
98.1%
|
Bacillus subtilis |
| ORF40 | 2 |
94.4%
|
31.4 |
94.4%
|
Bacillus subtilis |